Galaxy / CorGAT
Analyze Data
Workflow
Visualize
Create Visualization
Interactive Environments
Shared Data
Data Libraries
Histories
Workflows
Visualizations
Pages
Help
Support
Search
Mailing Lists
Videos
Wiki
How to Cite Galaxy
Interactive Tours
Login or Register
Using 0 bytes
Tools
Get Data
Upload File
from your computer
UCSC Main
table browser
UCSC Archaea
table browser
EBI SRA
ENA SRA
modENCODE fly
server
InterMine
server
Flymine
server
modENCODE modMine
server
MouseMine
server
Ratmine
server
YeastMine
server
modENCODE worm
server
WormBase
server
ZebrafishMine
server
EuPathDB
server
HbVar
Human Hemoglobin Variants and Thalassemias
Send Data
Send to cloud
Collection Operations
Unzip Collection
Zip Collection
Filter failed
datasets from a collection
Filter empty
datasets from a collection
Flatten Collection
into a flat list of datasets
Merge Collections
into single list of datasets
Relabel List Identifiers
from contents of a file
Filter List
from contents of a file
Sort Collection
of list of datasets
Tag elements from file
from contents of a file
Apply Rule to Collection
Build List
from one or more datasets
Extract Dataset
from a list
Expression Tools
Lift-Over
Convert genome coordinates
between assemblies and genomes
Text Manipulation
Add column
to an existing dataset
Concatenate datasets
tail-to-head
Cut
columns from a table
Merge Columns
together
Convert
delimiters to TAB
Create single interval
as a new dataset
Change Case
of selected columns
Paste
two files side by side
Remove beginning
of a file
Select random lines
from a file
Select first
lines from a dataset
Select last
lines from a dataset
Trim
leading or trailing characters
Line/Word/Character count
of a dataset
Secure Hash / Message Digest
on a dataset
Convert Formats
BED-to-GFF
converter
GFF-to-BED
converter
MAF to BED
Converts a MAF formatted file to the BED format
MAF to Interval
Converts a MAF formatted file to the Interval format
MAF to FASTA
Converts a MAF formatted file to FASTA format
SFF converter
Wig/BedGraph-to-bigWig
converter
BED-to-bigBed
converter
Filter and Sort
Filter
data on any column using simple expressions
Sort
data in ascending or descending order
Select
lines that match an expression
GFF
Extract features
from GFF data
Filter GFF data by attribute
using simple expressions
Filter GFF data by feature count
using simple expressions
Filter GTF data by attribute values_list
Join, Subtract and Group
Join two Datasets
side by side on a specified field
Compare two Datasets
to find common or distinct rows
Group
data by a column and perform aggregate operation on other columns.
Fetch Alignments/Sequences
Extract Pairwise MAF blocks
given a set of genomic intervals
Extract MAF blocks
given a set of genomic intervals
Split MAF blocks
by Species
Stitch MAF blocks
given a set of genomic intervals
Stitch Gene blocks
given a set of coding exon intervals
MAF Coverage Stats
Alignment coverage information
Join MAF blocks
by Species
Filter MAF blocks
by Species
Filter MAF blocks
by Size
Extract MAF by block number
given a set of block numbers and a MAF file
Reverse Complement
a MAF file
Filter MAF
by specified attributes
Operate on Genomic Intervals
Wiggle-to-Interval
converter
Aggregate datapoints
Appends the average, min, max of datapoints per interval
Gene BED To Exon/Intron/Codon BED
expander
Statistics
Summary Statistics
for any numerical column
Count
occurrences of each record
Graph/Display Data
VCF to MAF Custom Track
for display at UCSC
Phenotype Association
g:Profiler
tools for functional profiling of gene lists
DAVID
functional annotation for a list of genes
LD
linkage disequilibrium and tag SNPs
MasterVar to pgSnp
Convert from MasterVar to pgSnp format
Coronavirus Genome Annotation Tool
nucmer_snp
Align single fasta files to SARS-CoV-2 genome and call genetic variants
join_nucmer
Join multiple mummer output files in a phenetic matrix
FunAnn
Performs functional annotation of genetic variants
multiFC
Process multi-fasta files to derive a phenetic matrix of genetic variants.
Tools/utilities for Haplogroup assignment
assignHG
Workflows
All workflows
History
loading...